BeSTGRID - Recent changes [en]

IRODS deployment plan

Vladimir@bestgrid.org — Thu, 17 May 2012 02:27:06 GMT

Post-configuration: DONE

←Older revision		Revision as of 02:27, 17 May 2012
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	ichmod read public /BeSTGRID/home/__PUBLIC		ichmod read public /BeSTGRID/home/__PUBLIC

-	* Configure alternative hostnames: edit server/config/irodsHost and put there:<pre>localhost hpcgrid1.canterbury.ac.nz hpcgrid1 hpcgrid1-c</pre>	+	* Configure alternative hostnames: edit <tt>server/config/irodsHost</tt> and put there the following lines that:
-	** Restart irods:<pre>/usr/local/pkg/irods/iRODS/irodsctl restart</pre>	+	** Establish local aliases for this server
		+	** Set preferred hostname for ngdata (going via the back-channel link):
		+	<pre>
		+	localhost hpcgrid1.canterbury.ac.nz hpcgrid1 hpcgrid1-c
		+	ngdata-c ngdata.canterbury.ac.nz ngdata
		+	</pre>
		+	* Restart irods:<pre>/usr/local/pkg/irods/iRODS/irodsctl restart</pre>
		+
		+	* NOTE: do the same on ngdata: configure this host to <tt>hpcgrid1-c</tt> as the perferred hostname for connecting to hpcgrid1. Put this into <tt>server/config/irodsHost</tt> on <b>ngdata</b>:
		+	<pre>
		+	localhost ngdata.canterbury.ac.nz df.bestgrid.org
		+	hpcgrid1-c hpcgrid1.canterbury.ac.nz
		+	</pre>

	* Configure GSI:		* Configure GSI:

Software List On BeSTGRID Resources

Grisu-bot666@bestgrid.org — Wed, 16 May 2012 03:00:03 GMT

←Older revision		Revision as of 03:00, 16 May 2012
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	\|-		\|-
	\| '''R''' \|\|2.13.1<br>2.9.0 \|\| 2.11.0<br>2.13.1<br>2.14.0<br>2.5.0 \|\| 2.13.0		\| '''R''' \|\|2.13.1<br>2.9.0 \|\| 2.11.0<br>2.13.1<br>2.14.0<br>2.5.0 \|\| 2.13.0
		+	\|-
		+	\| '''RAxML''' \|\| \|\| 7.2.8 \|\|
	\|-		\|-
	\| '''RMPISNOW''' \|\|2.9.0 \|\| 2.11.0<br>2.13.1 \|\| 2.13.0		\| '''RMPISNOW''' \|\|2.9.0 \|\| 2.11.0<br>2.13.1 \|\| 2.13.0

Installing an iRODS slave server

Vladimir@bestgrid.org — Fri, 11 May 2012 05:00:08 GMT

Installing iRODS

←Older revision		Revision as of 05:00, 11 May 2012
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	** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.		** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.
	** [[Media:Irods-2.4.1-initserver-queagentproc.patch.txt\|irods-2.4.1-initserver-queagentproc.patch]], fixing a server crash issue		** [[Media:Irods-2.4.1-initserver-queagentproc.patch.txt\|irods-2.4.1-initserver-queagentproc.patch]], fixing a server crash issue
-	** [[Media:Irods-2.4.1-fileOpr-race.patch.txt\|irods-2.4.1-fileOpr-race.patch], Rob Burrows' fix to a race condition	+	** [[Media:Irods-2.4.1-fileOpr-race.patch.txt\|irods-2.4.1-fileOpr-race.patch]], Rob Burrows' fix to a race condition

	* For iRODS 2.5:		* For iRODS 2.5:

Software List On BeSTGRID Resources

Grisu-bot666@bestgrid.org — Fri, 11 May 2012 05:00:03 GMT

←Older revision		Revision as of 05:00, 11 May 2012
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	\| '''MrBayes''' \|\|3.1.2<br>3.2.1 \|\| 3.1.2<br>3.2.1 \|\| 3.1.2		\| '''MrBayes''' \|\|3.1.2<br>3.2.1 \|\| 3.1.2<br>3.2.1 \|\| 3.1.2
	\|-		\|-
-	\| '''NAMD''' \|\| \|\| 2.6 \|\|	+	\| '''NAMD''' \|\| \|\| 2.9 \|\|
	\|-		\|-
	\| '''octave''' \|\|3.0.3 \|\| \|\|		\| '''octave''' \|\|3.0.3 \|\| \|\|

Installing an iRODS slave server

Vladimir@bestgrid.org — Fri, 11 May 2012 04:59:53 GMT

Installing iRODS

←Older revision		Revision as of 04:59, 11 May 2012
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	** [https://www.irods.org/index.php/iRODS_2.4.1_Patch_1 iRODS 2.4.1 Patch 1], fixing a problem in FUSE		** [https://www.irods.org/index.php/iRODS_2.4.1_Patch_1 iRODS 2.4.1 Patch 1], fixing a problem in FUSE
	** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.		** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.
-	** irods-2.4.1-initserver-queagentproc.patch, fixing a server crash issue	+	** [[Media:Irods-2.4.1-initserver-queagentproc.patch.txt\|irods-2.4.1-initserver-queagentproc.patch]], fixing a server crash issue
-	** irods-2.4.1-fileOpr-race.patch, Rob Burrows' fix to a race condition	+	** [[Media:Irods-2.4.1-fileOpr-race.patch.txt\|irods-2.4.1-fileOpr-race.patch], Rob Burrows' fix to a race condition

	* For iRODS 2.5:		* For iRODS 2.5:

Special:Log/upload

Vladimir@bestgrid.org — Fri, 11 May 2012 04:57:51 GMT

uploaded "Image:Irods-2.4.1-fileOpr-race.patch.txt"

Special:Log/upload

Vladimir@bestgrid.org — Fri, 11 May 2012 04:57:36 GMT

uploaded "Image:Irods-2.4.1-initserver-queagentproc.patch.txt"

Installing an iRODS slave server

Vladimir@bestgrid.org — Fri, 11 May 2012 04:46:53 GMT

Installing iRODS

←Older revision		Revision as of 04:46, 11 May 2012
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	** [https://www.irods.org/index.php/irods_2.4_patch_1 irods_2.4_patch_1] [http://groups.google.com/group/irod-chat/browse_thread/thread/6ced0321d5ff1c27 fixing a seg fault problem in the irodsServer]		** [https://www.irods.org/index.php/irods_2.4_patch_1 irods_2.4_patch_1] [http://groups.google.com/group/irod-chat/browse_thread/thread/6ced0321d5ff1c27 fixing a seg fault problem in the irodsServer]
	** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.		** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.
		+
		+	* For iRODS 2.4.1, apply the following patches:
		+	** [https://www.irods.org/index.php/iRODS_2.4.1_Patch_1 iRODS 2.4.1 Patch 1], fixing a problem in FUSE
		+	** [http://projects.arcs.org.au/svn/systems/trunk/dataFabricScripts/iRODS/BugFix/patches-2.4/aclpolicy_username.patch aclpolicy_username.patch] (for <tt>server/api/src/rsGenQuery.c</tt>) allowing <tt>$clientUserName</tt> to be used in acAclPolicy (needed for QuickShare). Thanks to Sean Flemming for this patch.
		+	** irods-2.4.1-initserver-queagentproc.patch, fixing a server crash issue
		+	** irods-2.4.1-fileOpr-race.patch, Rob Burrows' fix to a race condition

	* For iRODS 2.5:		* For iRODS 2.5:

Installing an iRODS slave server

Rbur004@auckland.ac.nz — Thu, 10 May 2012 22:16:04 GMT

Installing iRODS FUSE Client

←Older revision		Revision as of 22:16, 10 May 2012
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	</pre>		</pre>

-	*Even easier for users, is this script which finds and unmounts their iRODS Fuse mounts.	+	*Even easier for users, is this script which finds and unmounts their iRODS Fuse mounts. (Nb. /bin/mount on different systems have slightly different formats, so this may need modifying)
	<pre>		<pre>
	#!/usr/bin/ruby		#!/usr/bin/ruby